Built for the community

Interactive viewer for AlphaFold models of the hepatitis E virus replication polyprotein (ORF1), across HEV species and genotypes.

Analysis and visualization of AlphaFold3 results — ipSAE score calculations, per-residue and per-chain plots, and filtering to AlphaFold-only models.

Build AlphaFold3 and Boltz-2 JSON/YAML input files in your browser, with support for many PTMs (including s-farnesyl-l-cysteine).

Convert between simulation steps, timesteps and simulated time — quick unit math for molecular dynamics.

Fetch sequences from UniProt, and copy multiple sequences in a single FASTA file.

Automatic GROMACS protocol from preparation to production, with ligand parametrization integrated (via acpype).

Simple Molecular Dynamics Analysis graphical interface — a friendly front-end to MDTraj to generalize MD analysis.

Personal toolkit of scripts and notebooks for AlphaFold: batch analysis, statistics and visualizations of predictions.

Submission server for ColabFold (AlphaFold) developed for the I2BC institute — queue-based, multi-user prediction runs.

Correct MRC files with an FFT shift and mirror transform to get fully symmetrical, spherical density maps.

Homogeneous filtering of RELION star particle files based on rotation and tilt angles.

Automated docking screening protocol with AutoDock-GPU.